ggdag (version 0.2.7)

Equivalent DAGs and Classes: Generating Equivalent Models

Description

Returns a set of complete partially directed acyclic graphs (CPDAGs) given an input DAG. CPDAGs are Markov equivalent to the input graph. See dagitty::equivalentDAGs() for details. node_equivalent_dags() returns a set of DAGs, while node_equivalent_class() tags reversable edges. ggdag_equivalent_dags() plots all equivalent DAGs, while ggdag_equivalent_class() plots all reversable edges as undirected.

Usage

node_equivalent_dags(.dag, n = 100, layout = "auto", ...)
ggdag_equivalent_dags(
  .tdy_dag,
  ...,
  node_size = 16,
  text_size = 3.88,
  label_size = text_size,
  text_col = "white",
  label_col = "black",
  node = TRUE,
  stylized = FALSE,
  text = TRUE,
  use_labels = NULL
)
node_equivalent_class(.dag, layout = "auto")
ggdag_equivalent_class(
  .tdy_dag,
  expand_x = expansion(c(0.1, 0.1)),
  expand_y = expansion(c(0.1, 0.1)),
  breaks = ggplot2::waiver(),
  ...,
  node_size = 16,
  text_size = 3.88,
  label_size = text_size,
  text_col = "white",
  label_col = text_col,
  node = TRUE,
  stylized = FALSE,
  text = TRUE,
  use_labels = NULL
)

Value

a tidy_dagitty with at least one DAG, including a dag

column to identify graph set for equivalent DAGs or a reversable

column for equivalent classes, or a ggplot

Arguments

.dag

input graph, an object of class tidy_dagitty or dagitty

n

maximal number of returned graphs.

layout

a layout available in ggraph. See ggraph::create_layout() for details.

...

optional arguments passed to ggraph::create_layout()

.tdy_dag

an object of class tidy_dagitty or dagitty

node_size

size of DAG node

text_size

size of DAG text

label_size

size of label text

text_col

color of DAG text

label_col

color of label text

node

logical. Should nodes be included in the DAG?

stylized

logical. Should DAG nodes be stylized? If so, use geom_dag_nodes and if not use geom_dag_point

text

logical. Should text be included in the DAG?

use_labels

a string. Variable to use for geom_dag_repel_label(). Default is NULL.

expand_x, expand_y

Vector of range expansion constants used to add some padding around the data, to ensure that they are placed some distance away from the axes. Use the convenience function ggplot2::expansion() to generate the values for the expand argument.

breaks

One of:

• NULL for no breaks

• waiver() for the default breaks computed by the transformation object

• A numeric vector of positions

• A function that takes the limits as input and returns breaks as output

Examples

g_ex <- dagify(y ~ x + z, x ~ z)

g_ex %>% node_equivalent_class()

g_ex %>% ggdag_equivalent_dags()